General Support: best way to integrate into website

hi,
Just wondering what teh best way to integrate plogger into a website. i have a standard top menu and side menu style. currently i have skinned the index.php page found in the plogger directory to match my website. but i would rather have plogger incoprerated into some of my other pages so thati can have custom menus on the individual pages. basically:

current: mydomain.com/plogger/index.php (this is where i have to point all my pages to display the gallary

I want: mydomain.com/pictures ( this shows one collection)
mydomain.com/travel (this shows a different collection
each of these pages would have different set of menu items on it.

I don't really want to use iframes... are there any suggestions?

thanks